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Professor Erik Meijering

Professor Erik Meijering

Professor
Engineering
Computer Science and Engineering

Erik Meijering is a Professor of Biomedical Image Computing in the School of Computer Science and Engineering. His research focuses聽on the development of innovative computer vision and machine learning (in particular deep learning) methods for automated quantitative analysis of biomedical imaging data.

He received the MSc degree in Electrical Engineering from Delft University of Technology (Delft, the Netherlands) in 1996 and the PhD degree in Medical Image Analysis from Utrecht University (Utrecht, the Netherlands) in 2000. Before coming to the University of New South Wales (UNSW, Sydney, Australia) in 2019, he was a Postdoctoral Fellow at the Swiss Federal Institute of Technology (Lausanne, Switzerland) from 2000-2002, an Assistant Professor at Erasmus University Medical Center (Rotterdam, the Netherlands) from 2002-2008, and an聽Associate Professor at the same institute from 2008-2019.

Since 2019 he is a Fellow of the Institute of Electrical and Electronics Engineers (IEEE). Within IEEE he is a member of聽the Signal Processing Society (SPS) and the Engineering in Medicine and Biology Society (EMBS), and served/serves on the SPS Technical Committee on Bio Imaging and Signal Processing (BISP) (2005-2010 and聽2017-2020), the SPS Technical Directions Board (2018-2019), the EMBS Technical Committee on Biomedical Imaging and Image Processing (BIIP) (since 2007), and the聽cross-Society IEEE Life Sciences Technical Community (LSTC) (since 2018).

Over the years he was/is an Associate Editor for the IEEE Transactions on Medical Imaging (since 2004), the International Journal on Biomedical Imaging (2006-2009), the IEEE Transactions on Image Processing (2008-2011), has co-edited various journal special issues on topics related to biomedical imaging, and has co-organized various conferences in the field, notably the IEEE International Symposium on Biomedical Imaging (ISBI 2002, 2004, 2006, 2010, 2015, 2018). He also served/serves on a great variety of other international conference, advisory, and review boards.

Phone
+61 2 9065 2040
Location
Online or K17 Room 412D
  • Book Chapters | 2024
    Liu M; Lin Z; Chen W; Meijering E; Wang Y, 2024, 'DNeuroMAT: A Deep-Learning-Based Neuron Morphology Analysis Toolbox', in Methods in Molecular Biology, pp. 179 - 197,
    Book Chapters | 2023
    Khan TM; Naqvi SS; Robles-Kelly A; Meijering E, 2023, 'Neural Network Compression by聽Joint Sparsity Promotion and聽Redundancy Reduction', in , pp. 612 - 623,
    Book Chapters | 2023
    Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2023, 'Uncertainty and Shape-Aware Continual Test-Time Adaptation for Cross-Domain Segmentation of Medical Images', in , pp. 659 - 669,
    Book Chapters | 2022
    Meijering E; Smal I; Dzyubachyk O; Olivo-Marin JC, 2022, 'Motion Tracking and Analysis', in Microscope Image Processing, Second Edition, pp. 393 - 430,
    Book Chapters | 2021
    Hu Y; Meijering E; Xia Y; Song Y, 2021, 'Deformable Convolution and聽Semi-supervised Learning in聽Point Clouds for聽Aneurysm Classification and聽Segmentation', in Neural Information Processing, pp. 283 - 290,
    Book Chapters | 2021
    Wei W; Haidinger S; Lock J; Meijering E, 2021, 'Deep Representation Learning for Image-Based Cell Profiling', in Machine Learning in Medical Imaging, pp. 487 - 497,
    Book Chapters | 2017
    Yao Y; Smal I; Grigoriev I; Martin M; Akhmanova A; Meijering E, 2017, 'Automated analysis of intracellular dynamic processes', in Methods in Molecular Biology, pp. 209 - 228,
    Book Chapters | 2012
    Meijering E; Dzyubachyk O; Smal I, 2012, 'Methods for cell and particle tracking', in Methods in Enzymology, pp. 183 - 200,
    Book Chapters | 2008
    Meijering E; Smal I; Dzyubachyk O; Olivo-Marin JC, 2008, 'Time-Lapse Imaging', in Microscope Image Processing, pp. 401 - 440,
    Book Chapters | 2008
    Meijering E; Smal I; Dzyubachyk O; Olivo鈥怣arin J, 2008, 'Chapter 15 Time鈥怢apse Imaging', in Microscope Image Processing, Elsevier, pp. 401 - 440,
    Book Chapters | 2007
    Meijering E; Cappellen GV, 2007, 'Quantitative Biological Image Analysis', in Principles and Practice, Springer Berlin Heidelberg, pp. 45 - 70,
  • Journal articles | 2025
    Iqbal S; Khan TM; Naqvi SS; Naveed A; Meijering E, 2025, 'TBConvL-Net: A hybrid deep learning architecture for robust medical image segmentation', Pattern Recognition, 158,
    Journal articles | 2024
    Du H; Wang J; Liu M; Wang Y; Meijering E, 2024, 'SwinPA-Net: Swin Transformer-Based Multiscale Feature Pyramid Aggregation Network for Medical Image Segmentation', IEEE Transactions on Neural Networks and Learning Systems, 35, pp. 5355 - 5366,
    Journal articles | 2024
    Hasan MM; Phu J; Sowmya A; Meijering E; Kalloniatis M, 2024, 'Artificial intelligence in the diagnosis of glaucoma and neurodegenerative diseases', Clinical and Experimental Optometry, 107, pp. 130 - 146,
    Journal articles | 2024
    Khan TM; Naqvi SS; Meijering E, 2024, 'ESDMR-Net: A lightweight network with expand-squeeze and dual multiscale residual connections for medical image segmentation', Engineering Applications of Artificial Intelligence, 133,
    Journal articles | 2024
    Liu M; Han Y; Wang J; Wang C; Wang Y; Meijering E, 2024, 'LSKANet: Long Strip Kernel Attention Network for Robotic Surgical Scene Segmentation', IEEE Transactions on Medical Imaging, 43, pp. 1308 - 1322,
    Journal articles | 2024
    Liu M; Wu S; Chen R; Lin Z; Wang Y; Meijering E, 2024, 'Brain Image Segmentation for Ultrascale Neuron Reconstruction via an Adaptive Dual-Task Learning Network', IEEE Transactions on Medical Imaging, 43, pp. 2574 - 2586,
    Journal articles | 2024
    Maier-Hein L; Reinke A; Godau P; Tizabi MD; Buettner F; Christodoulou E; Glocker B; Isensee F; Kleesiek J; Kozubek M; Reyes M; Riegler MA; Wiesenfarth M; Kavur AE; Sudre CH; Baumgartner M; Eisenmann M; Heckmann-N枚tzel D; R盲dsch T; Acion L; Antonelli M; Arbel T; Bakas S; Benis A; Blaschko MB; Cardoso MJ; Cheplygina V; Cimini BA; Collins GS; Farahani K; Ferrer L; Galdran A; van Ginneken B; Haase R; Hashimoto DA; Hoffman MM; Huisman M; Jannin P; Kahn CE; Kainmueller D; Kainz B; Karargyris A; Karthikesalingam A; Kofler F; Kopp-Schneider A; Kreshuk A; Kurc T; Landman BA; Litjens G; Madani A; Maier-Hein K; Martel AL; Mattson P; Meijering E; Menze B; Moons KGM; M眉ller H; Nichyporuk B; Nickel F; Petersen J; Rajpoot N; Rieke N; Saez-Rodriguez J; S谩nchez CI; Shetty S; van Smeden M; Summers RM; Taha AA; Tiulpin A; Tsaftaris SA; Van Calster B; Varoquaux G; J盲ger PF, 2024, 'Metrics reloaded: recommendations for image analysis validation', Nature Methods, 21, pp. 195 - 212,
    Journal articles | 2024
    Manubens-Gil L; Zhou Z; Chen H; Ramanathan A; Liu X; Liu Y; Bria A; Gillette T; Ruan Z; Yang J; Radojevi膰 M; Zhao T; Cheng L; Qu L; Liu S; Bouchard KE; Gu L; Cai W; Ji S; Roysam B; Wang CW; Yu H; Sironi A; Iascone DM; Zhou J; Bas E; Conde-Sousa E; Aguiar P; Li X; Li Y; Nanda S; Wang Y; Muresan L; Fua P; Ye B; He HY; Staiger JF; Peter M; Cox DN; Simonneau M; Oberlaender M; Jefferis G; Ito K; Gonzalez-Bellido P; Kim J; Rubel E; Cline HT; Zeng H; Nern A; Chiang AS; Yao J; Roskams J; Livesey R; Stevens J; Liu T; Dang C; Guo Y; Zhong N; Tourassi G; Hill S; Hawrylycz M; Koch C; Meijering E; Ascoli GA; Peng H, 2024, 'Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets (Nature Methods, (2023), 20, 6, (824-835), 10.1038/s41592-023-01848-5)', Nature Methods, 21, pp. 1959,
    Journal articles | 2024
    Mondol RK; Millar EKA; Sowmya A; Meijering E, 2024, 'BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion', IEEE Journal of Biomedical and Health Informatics, 28, pp. 5290 - 5302,
    Journal articles | 2024
    Rahaman MM; Millar EKA; Meijering E, 2024, 'Generalized deep learning for histopathology image classification using supervised contrastive learning', Journal of Advanced Research,
    Journal articles | 2024
    Reinke A; Tizabi MD; Baumgartner M; Eisenmann M; Heckmann-N枚tzel D; Kavur AE; R盲dsch T; Sudre CH; Acion L; Antonelli M; Arbel T; Bakas S; Benis A; Buettner F; Cardoso MJ; Cheplygina V; Chen J; Christodoulou E; Cimini BA; Farahani K; Ferrer L; Galdran A; van Ginneken B; Glocker B; Godau P; Hashimoto DA; Hoffman MM; Huisman M; Isensee F; Jannin P; Kahn CE; Kainmueller D; Kainz B; Karargyris A; Kleesiek J; Kofler F; Kooi T; Kopp-Schneider A; Kozubek M; Kreshuk A; Kurc T; Landman BA; Litjens G; Madani A; Maier-Hein K; Martel AL; Meijering E; Menze B; Moons KGM; M眉ller H; Nichyporuk B; Nickel F; Petersen J; Rafelski SM; Rajpoot N; Reyes M; Riegler MA; Rieke N; Saez-Rodriguez J; S谩nchez CI; Shetty S; Summers RM; Taha AA; Tiulpin A; Tsaftaris SA; Van Calster B; Varoquaux G; Yaniv ZR; J盲ger PF; Maier-Hein L, 2024, 'Understanding metric-related pitfalls in image analysis validation', Nature Methods, 21, pp. 182 - 194,
    Journal articles | 2024
    Tchetchenian A; Zekelman L; Chen Y; Rushmore J; Zhang F; Yeterian EH; Makris N; Rathi Y; Meijering E; Song Y; O'Donnell LJ, 2024, 'Deep multimodal saliency parcellation of cerebellar pathways: Linking microstructure and individual function through explainable multitask learning', Human Brain Mapping, 45,
    Journal articles | 2024
    Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2024, 'Hybrid dual mean-teacher network with double-uncertainty guidance for semi-supervised segmentation of magnetic resonance images', Computerized Medical Imaging and Graphics, 115,
    Journal articles | 2024
    Zhu J; Bolsterlee B; Song Y; Meijering E, 2024, 'Improving cross-domain generalizability of medical image segmentation using uncertainty and shape-aware continual test-time domain adaptation', Medical Image Analysis, pp. 103422 - 103422,
    Journal articles | 2023
    Aviyente S; Frangi AF; Meijering E; Munoz-Barrutia A; Liebling M; Van De Ville D; Olivo-Marin JC; Kovacevic J; Unser M, 2023, 'From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee', IEEE Signal Processing Magazine, 40, pp. 61 - 71,
    Journal articles | 2023
    Chen R; Liu M; Chen W; Wang Y; Meijering E, 2023, 'Deep learning in mesoscale brain image analysis: A review', Computers in Biology and Medicine, 167,
    Journal articles | 2023
    Fan L; Sowmya A; Meijering E; Song Y, 2023, 'Cancer Survival Prediction From Whole Slide Images With Self-Supervised Learning and Slide Consistency', IEEE Transactions on Medical Imaging, 42, pp. 1401 - 1412,
    Journal articles | 2023
    Gunawan I; Vafaee F; Meijering E; Lock JG, 2023, 'An introduction to representation learning for single-cell data analysis', Cell Reports Methods, 3,
    Journal articles | 2023
    Khan TM; Arsalan M; Razzak I; Meijering E, 2023, 'Simple and robust depth-wise cascaded network for polyp segmentation', Engineering Applications of Artificial Intelligence, 121,
    Journal articles | 2023
    Manubens-Gil L; Zhou Z; Chen H; Ramanathan A; Liu X; Liu Y; Bria A; Gillette T; Ruan Z; Yang J; Radojevi膰 M; Zhao T; Cheng L; Qu L; Liu S; Bouchard KE; Gu L; Cai W; Ji S; Roysam B; Wang CW; Yu H; Sironi A; Iascone DM; Zhou J; Bas E; Conde-Sousa E; Aguiar P; Li X; Li Y; Nanda S; Wang Y; Muresan L; Fua P; Ye B; He HY; Staiger JF; Peter M; Cox DN; Simonneau M; Oberlaender M; Jefferis G; Ito K; Gonzalez-Bellido P; Kim J; Rubel E; Cline HT; Zeng H; Nern A; Chiang AS; Yao J; Roskams J; Livesey R; Stevens J; Liu T; Dang C; Guo Y; Zhong N; Tourassi G; Hill S; Hawrylycz M; Koch C; Meijering E; Ascoli GA; Peng H, 2023, 'BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets', Nature Methods, 20, pp. 824 - 835,
    Journal articles | 2023
    Ma拧ka M; Ulman V; Delgado-Rodriguez P; G贸mez-de-Mariscal E; Ne膷asov谩 T; Guerrero Pe帽a FA; Ren TI; Meyerowitz EM; Scherr T; L枚ffler K; Mikut R; Guo T; Wang Y; Allebach JP; Bao R; Al-Shakarji NM; Rahmon G; Toubal IE; Palaniappan K; Lux F; Matula P; Sugawara K; Magnusson KEG; Aho L; Cohen AR; Arbelle A; Ben-Haim T; Raviv TR; Isensee F; J盲ger PF; Maier-Hein KH; Zhu Y; Ederra C; Urbiola A; Meijering E; Cunha A; Mu帽oz-Barrutia A; Kozubek M; Ortiz-de-Sol贸rzano C, 2023, 'The Cell Tracking Challenge: 10 years of objective benchmarking', Nature Methods, 20, pp. 1010 - 1020,
    Journal articles | 2023
    Mondol RK; Millar EKA; Graham PH; Browne L; Sowmya A; Meijering E, 2023, 'hist2RNA: An Efficient Deep Learning Architecture to Predict Gene Expression from Breast Cancer Histopathology Images', Cancers, 15, pp. 2569,
    Journal articles | 2023
    Rahaman MM; Millar EKA; Meijering E, 2023, 'Breast cancer histopathology image-based gene expression prediction using spatial transcriptomics data and deep learning', Scientific Reports, 13, pp. 13604,
    Journal articles | 2023
    Rana P; Sowmya A; Meijering E; Song Y, 2023, 'Imbalanced classification for protein subcellular localization with multilabel oversampling', Bioinformatics, 39,
    Journal articles | 2023
    Shen W; Wang Y; Liu M; Wang J; Ding R; Zhang Z; Meijering E, 2023, 'Branch Aggregation Attention Network for Robotic Surgical Instrument Segmentation', IEEE Transactions on Medical Imaging, 42, pp. 3408 - 3419,
    Journal articles | 2023
    Tchetchenian A; Zhu Y; Zhang F; O鈥橠onnell LJ; Song Y; Meijering E, 2023, 'A comparison of manual and automated neural architecture search for white matter tract segmentation', Scientific Reports, 13,
    Journal articles | 2023
    Wei X; Liu Q; Liu M; Wang Y; Meijering E, 2023, '3D Soma Detection in Large-Scale Whole Brain Images via a Two-Stage Neural Network', IEEE Transactions on Medical Imaging, 42, pp. 148 - 157,
    Journal articles | 2023
    Zhu Y; Wang M; Yin X; Zhang J; Meijering E; Hu J, 2023, 'Deep Learning in Diverse Intelligent Sensor Based Systems', Sensors, 23, pp. 62,
    Journal articles | 2023
    Zhu Y; Yin X; Meijering E, 2023, 'A Compound Loss Function With Shape Aware Weight Map for Microscopy Cell Segmentation', IEEE Transactions on Medical Imaging, 42, pp. 1278 - 1288,
    Journal articles | 2022
    Chen W; Liu M; Du H; Radojevic M; Wang Y; Meijering E, 2022, 'Deep-Learning-Based Automated Neuron Reconstruction From 3D Microscopy Images Using Synthetic Training Images', IEEE Transactions on Medical Imaging, 41, pp. 1031 - 1042,
    Journal articles | 2022
    Fetanat M; Stevens M; Jain P; Hayward C; Meijering E; Lovell NH, 2022, 'Fully Elman Neural Network: A Novel Deep Recurrent Neural Network Optimized by an Improved Harris Hawks Algorithm for Classification of Pulmonary Arterial Wedge Pressure', IEEE Transactions on Biomedical Engineering, 69, pp. 1733 - 1744,
    Journal articles | 2022
    Jiang Y; Chen W; Liu M; Wang Y; Meijering E, 2022, 'DeepRayburst for Automatic Shape Analysis of Tree-Like Structures in Biomedical Images', IEEE Journal of Biomedical and Health Informatics, 26, pp. 2204 - 2215,
    Journal articles | 2022
    Khan TM; Naqvi SS; Meijering E, 2022, 'Leveraging image complexity in macro-level neural network design for medical image segmentation', Scientific Reports, 12,
    Journal articles | 2022
    Meijering E; Calhoun VD; Menegaz G; Miller DJ; Ye JC, 2022, 'Deep Learning in Biological Image and Signal Processing', IEEE Signal Processing Magazine, 39, pp. 24 - 26,
    Journal articles | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, 'Data augmentation with improved regularisation and sampling for imbalanced blood cell image classification', Scientific Reports, 12,
    Journal articles | 2022
    Sandarenu P; Millar EKA; Song Y; Browne L; Beretov J; Lynch J; Graham PH; Jonnagaddala J; Hawkins N; Huang J; Meijering E, 2022, 'Survival prediction in triple negative breast cancer using multiple instance learning of histopathological images', Scientific Reports, 12,
    Journal articles | 2022
    Snelders M; Koedijk IH; Schirmer J; Mulleners O; van Leeuwen J; de Wagenaar NP; Bartulos O; Voskamp P; Braam S; Guttenberg Z; Danser AHJ; Majoor-Krakauer D; Meijering E; van der Pluijm I; Essers J, 2022, 'Contraction pressure analysis using optical imaging in normal and MYBPC3-mutated hiPSC-derived cardiomyocytes grown on matrices with tunable stiffness', Biomaterials and Biosystems, 8,
    Journal articles | 2022
    Wang X; Liu M; Wang Y; Fan J; Meijering E, 2022, 'A 3D Tubular Flux Model for Centerline Extraction in Neuron Volumetric Images', IEEE Transactions on Medical Imaging, 41, pp. 1069 - 1079,
    Journal articles | 2022
    Yang B; Liu M; Wang Y; Zhang K; Meijering E, 2022, 'Structure-Guided Segmentation for 3D Neuron Reconstruction', IEEE Transactions on Medical Imaging, 41, pp. 903 - 914,
    Journal articles | 2021
    Chen W; Liu M; Zhan Q; Tan Y; Meijering E; Radojevic M; Wang Y, 2021, 'Spherical-Patches Extraction for Deep-Learning-Based Critical Points Detection in 3D Neuron Microscopy Images', IEEE Transactions on Medical Imaging, 40, pp. 527 - 538,
    Journal articles | 2021
    Jiang Y; Chen W; Liu M; Wang Y; Meijering E, 2021, '3D Neuron Microscopy Image Segmentation via the Ray-Shooting Model and a DC-BLSTM Network', IEEE Transactions on Medical Imaging, 40, pp. 26 - 37,
    Journal articles | 2021
    Lin Z; Wu B; Paul MW; Li KW; Yao Y; Smal I; Onori MP; Hasanbegovic H; Bezstarosti K; Demmers J; Houtsmuller AB; Meijering E; Hoebeek FE; Schonewille M; Smit AB; Gao Z; de Zeeuw CI, 2021, 'Protein phosphatase 2b dual function facilitates synaptic integrity and motor learning', Journal of Neuroscience, 41, pp. 5579 - 5594,
    Journal articles | 2021
    Mouiee DA; Meijering E; Kalloniatis M; Nivison-Smith L; Williams RA; Nayagam DAX; Spencer TC; Luu CD; McGowan C; Epp SB; Shivdasani MN, 2021, 'Classifying retinal degeneration in histological sections using deep learning', Translational Vision Science and Technology, 10,
    Journal articles | 2021
    Rana P; Sowmya A; Meijering E; Song Y, 2021, 'Estimation of three-dimensional chromatin morphology for nuclear classification and characterisation', Scientific Reports, 11,
    Journal articles | 2021
    Shen L; Liu M; Wang C; Guo C; Meijering E; Wang Y, 2021, 'Efficient 3D Junction Detection in Biomedical Images Based on a Circular Sampling Model and Reverse Mapping', IEEE Journal of Biomedical and Health Informatics, 25, pp. 1612 - 1623,
    Journal articles | 2021
    Zhu J; Bolsterlee B; Chow BVY; Cai C; Herbert RD; Song Y; Meijering E, 2021, 'Deep learning methods for automatic segmentation of lower leg muscles and bones from MRI scans of children with and without cerebral palsy', NMR in Biomedicine, 34,
    Journal articles | 2021
    Zhu Y; Meijering E, 2021, 'Automatic improvement of deep learning-based cell segmentation in time-lapse microscopy by neural architecture search', Bioinformatics, 37, pp. 4844 - 4850,
    Journal articles | 2020
    Meijering E, 2020, 'A bird's-eye view of deep learning in bioimage analysis', Computational and Structural Biotechnology Journal, 18, pp. 2312 - 2325,
    Journal articles | 2020
    Rana P; Sowmya A; Meijering E; Song Y, 2020, 'Estimation of Three-Dimensional Chromatin Morphology for Nuclear Classification and Characterisation', ,
    Journal articles | 2020
    Serra-Marques A; Martin M; Katrukha EA; Grigoriev I; Peeters CAE; Liu Q; Hooikaas PJ; Yao Y; Solianova V; Smal I; Pedersen LB; Meijering E; Kapitein LC; Akhmanova A, 2020, 'Concerted action of kinesins kif5b and kif13b promotes efficient secretory vesicle transport to microtubule plus ends', eLife, 9, pp. 1 - 37,
    Journal articles | 2020
    Yao Y; Smal I; Grigoriev I; Akhmanova A; Meijering E, 2020, 'Deep-learning method for data association in particle tracking', Bioinformatics, 36, pp. 4935 - 4941,
    Journal articles | 2019
    Arts M; Smal I; Paul MW; Wyman C; Meijering E, 2019, 'Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum', Scientific Reports, 9,
    Journal articles | 2019
    Castilla C; Maska M; Sorokin DV; Meijering E; Ortiz-De-Solorzano C, 2019, '3-D quantification of filopodia in motile cancer cells', IEEE Transactions on Medical Imaging, 38, pp. 862 - 872,
    Journal articles | 2019
    Fehri H; Gooya A; Lu Y; Meijering E; Johnston SA; Frangi AF, 2019, 'Bayesian Polytrees with Learned Deep Features for Multi-Class Cell Segmentation', IEEE Transactions on Image Processing, 28, pp. 3246 - 3260,
    Journal articles | 2019
    Kuil LE; Oosterhof N; Geurts SN; Van Der Linde HC; Meijering E; Van Ham TJ, 2019, 'Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain', DMM Disease Models and Mechanisms, 12,
    Journal articles | 2019
    Mata G; Radojevi膰 M; Fernandez-Lozano C; Smal I; Werij N; Morales M; Meijering E; Rubio J, 2019, 'Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning', Neuroinformatics, 17, pp. 253 - 269,
    Journal articles | 2019
    Radojevi膰 M; Meijering E, 2019, 'Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation', Neuroinformatics, 17, pp. 423 - 442,
    Journal articles | 2018
    Meijering E; Munoz-Barrutia A, 2018, 'IN THE SPOTLIGHT', IEEE SIGNAL PROCESSING MAGAZINE, 35, pp. 125 - +,
    Journal articles | 2018
    Meijering E; Munoz-Barrutia A, 2018, 'Spotlight on Bioimaging and Signal Processing [In the Spotlight]', IEEE Signal Processing Magazine, 35,
    Journal articles | 2017
    Peng H; Zhou Z; Meijering E; Zhao T; Ascoli GA; Hawrylycz M, 2017, 'Automatic tracing of ultra-volumes of neuronal images', Nature Methods, 14, pp. 332 - 333,
    Journal articles | 2017
    Radojevi膰 M; Meijering E, 2017, 'Automated neuron tracing using probability hypothesis density filtering', Bioinformatics, 33, pp. 1073 - 1080,
    Journal articles | 2017
    Ulman V; Ma拧ka M; Magnusson KEG; Ronneberger O; Haubold C; Harder N; Matula P; Matula P; Svoboda D; Radojevic M; Smal I; Rohr K; Jald茅n J; Blau HM; Dzyubachyk O; Lelieveldt B; Xiao P; Li Y; Cho SY; Dufour AC; Olivo-Marin JC; Reyes-Aldasoro CC; Solis-Lemus JA; Bensch R; Brox T; Stegmaier J; Mikut R; Wolf S; Hamprecht FA; Esteves T; Quelhas P; Demirel 脰; Malmstr枚m L; Jug F; Tomancak P; Meijering E; Mu帽oz-Barrutia A; Kozubek M; Ortiz-De-Solorzano C, 2017, 'An objective comparison of cell-tracking algorithms', Nature Methods, 14, pp. 1141 - 1152,
    Journal articles | 2017
    Yang C; Wu J; de Heus C; Grigoriev I; Liv N; Yao Y; Smal I; Meijering E; Klumperman J; Qi RZ; Akhmanova A, 2017, 'EB1 and EB3 regulate microtubule minus end organization and Golgi morphology', Journal of Cell Biology, 216, pp. 3179 - 3198,
    Journal articles | 2016
    Meijering E; Carpenter AE; Peng H; Hamprecht FA; Olivo-Marin JC, 2016, 'Imagining the future of bioimage analysis', Nature Biotechnology, 34, pp. 1250 - 1255,
    Journal articles | 2016
    Radojevi膰 M; Smal I; Meijering E, 2016, 'Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons', Neuroinformatics, 14, pp. 201 - 219,
    Journal articles | 2015
    Kr眉ger AV; Jelier R; Dzyubachyk O; Zimmerman T; Meijering E; Lehner B, 2015, 'Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis', Developmental Biology, 398, pp. 153 - 162,
    Journal articles | 2015
    Mu帽oz-Barrutia A; Kova膷evi膰 J; Kozubek M; Meijering E; Parvin B, 2015, 'Quantitative bioimaging: Signal processing in light microscopy', IEEE Signal Processing Magazine, 32, pp. 18 - 19,
    Journal articles | 2015
    Ortiz-De-Sol贸rzano C; Mu帽oz-Barrutia A; Meijering E; Kozubek M, 2015, 'Toward a morphodynamic model of the cell: Signal processing for cell modeling', IEEE Signal Processing Magazine, 32, pp. 20 - 29,
    Journal articles | 2015
    Peng H; Hawrylycz M; Roskams J; Hill S; Spruston N; Meijering E; Ascoli GA, 2015, 'BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images', Neuron, 87, pp. 252 - 256,
    Journal articles | 2015
    Peng H; Meijering E; Ascoli GA, 2015, 'From DIADEM to BigNeuron', Neuroinformatics, 13, pp. 259 - 260,
    Journal articles | 2015
    Plenge E; Klein S; Niessen WJ; Meijering E, 2015, 'Erratum: Multiple sparse representations classification (PLoS ONE (2015) 10:7 (e0131968) (Doi:10.1371/journal.pone.0131968))', PLoS ONE, 10,
    Journal articles | 2015
    Plenge E; Klein SS; Niessen WJ; Meijering E, 2015, 'Multiple sparse representations classification', PLoS ONE, 10,
    Journal articles | 2015
    Reuter M; Zelensky A; Smal I; Meijering E; van Cappellen WA; Martijn de Gruiter H; van Belle GJ; van Royen ME; Houtsmuller AB; Essers J; Kanaar R; Wyman C, 2015, 'Correction to: "BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells" [J. Cell Biol. Vol. 207 No. 5, December 8, 2014. Pages 599-613]', Journal of Cell Biology, 208, pp. 857 - 857,
    Journal articles | 2015
    Reuter M; Zelensky A; Smal I; Meijering E; van Cappellen WA; de Gruiter HM; van Belle GJ; van Royen ME; Houtsmuller AB; Essers J; Kanaar R; Wyman C, 2015, 'BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells (vol 207, pg 599, 2014)', JOURNAL OF CELL BIOLOGY, 208, pp. 857 - 857,
    Journal articles | 2015
    Smal I; Meijering E, 2015, 'Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy', Medical Image Analysis, 24, pp. 163 - 189,
    Journal articles | 2015
    Spanjaard E; Smal I; Angelopoulos N; Verlaan I; Matov A; Meijering E; Wessels L; Bos H; de Rooij J, 2015, 'Quantitative imaging of focal adhesion dynamics and their regulation by HGF and Rap1 signaling', Experimental Cell Research, 330, pp. 382 - 397,
    Journal articles | 2014
    Chenouard N; Smal I; De Chaumont F; Ma拧ka M; Sbalzarini IF; Gong Y; Cardinale J; Carthel C; Coraluppi S; Winter M; Cohen AR; Godinez WJ; Rohr K; Kalaidzidis Y; Liang L; Duncan J; Shen H; Xu Y; Magnusson KEG; Jald茅n J; Blau HM; Paul-Gilloteaux P; Roudot P; Kervrann C; Waharte F; Tinevez JY; Shorte SL; Willemse J; Celler K; Van Wezel GP; Dan HW; Tsai YS; De Sol贸rzano CO; Olivo-Marin JC; Meijering E, 2014, 'Objective comparison of particle tracking methods', Nature Methods, 11, pp. 281 - 289,
    Journal articles | 2014
    Dzyubachyk O; Khmelinskii A; Plenge E; Kok P; Snoeks TJA; Poot DHJ; Lowik CWGM; Botha CP; Niessen WJ; Van Der Weerd L; Meijering E; Lelieveldt BPF, 2014, 'Interactive local super-resolution reconstruction of whole-body MRI mouse data: A pilot study with applications to bone and kidney metastases', PLoS ONE, 9,
    Journal articles | 2014
    Ma拧ka M; Ulman V; Svoboda D; Matula P; Matula P; Ederra C; Urbiola A; Espa帽a T; Venkatesan S; Balak DMW; Karas P; Bolckov谩 T; 艩treitov谩 M; Carthel C; Coraluppi S; Harder N; Rohr K; Magnusson KEG; Jald茅n J; Blau HM; Dzyubachyk O; K艡铆啪ek P; Hagen GM; Pastor-Escuredo D; Jimenez-Carretero D; Ledesma-Carbayo MJ; Mu帽oz-Barrutia A; Meijering E; Kozubek M; Ortiz-De-Solorzano C, 2014, 'A benchmark for comparison of cell tracking algorithms', Bioinformatics, 30, pp. 1609 - 1617,
    Journal articles | 2014
    Poole DS; Plenge E; Poot DHJ; Lakke EAJF; Niessen WJ; Meijering E; van der Weerd L, 2014, 'Three-dimensional inversion recovery manganese-enhanced MRI of mouse brain using super-resolution reconstruction to visualize nuclei involved in higher brain function', NMR in Biomedicine, 27, pp. 749 - 759,
    Journal articles | 2014
    Ramnath NWM; Van De Luijtgaarden KM; Van Der Pluijm I; Van Nimwegen M; Van Heijningen PM; Swagemakers SMA; Van Thiel BS; Ridwan RY; Van Vliet N; Vermeij M; Hawinkels LJAC; De Munck A; Dzyubachyk O; Meijering E; Van Der Spek P; Rottier R; Yanagisawa H; Hendriks RW; Kanaar R; Rouwet EV; Kleinjan A; Essers J, 2014, 'Extracellular matrix defects in aneurysmal Fibulin-4 mice predispose to lung emphysema', PLoS ONE, 9,
    Journal articles | 2014
    Reuter M; Zelensky A; Smal I; Meijering E; van Cappellen WA; de Gruiter HM; van Belle GJ; van Royen ME; Houtsmuller AB; Essers J; Kanaar R; Wyman C, 2014, 'BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells', Journal of Cell Biology, 207, pp. 599 - 613,
    Journal articles | 2013
    Mohan R; Katrukha EA; Doodhi H; Smal I; Meijering E; Kapitein LC; Steinmetz MO; Akhmanova A, 2013, 'End-binding proteins sensitize microtubules to the action of microtubule-targeting agents', Proceedings of the National Academy of Sciences of the United States of America, 110, pp. 8900 - 8905,
    Journal articles | 2013
    Plenge E; Poot DHJ; Niessen WJ; Meijering E, 2013, 'Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI', Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8151 LNCS, pp. 123 - 130,
    Journal articles | 2012
    Meijering E, 2012, 'Cell segmentation: 50 Years down the road [life Sciences]', IEEE Signal Processing Magazine, 29, pp. 140 - 145,
    Journal articles | 2012
    Plenge E; Poot DHJ; Bernsen M; Kotek G; Houston G; Wielopolski P; Van Der Weerd L; Niessen WJ; Meijering E, 2012, 'Super-resolution methods in MRI: Can they improve the trade-off between resolution, signal-to-noise ratio, and acquisition time?', Magnetic Resonance in Medicine, 68, pp. 1983 - 1993,
    Journal articles | 2012
    Smal I; Carranza-Herrezuelo N; Klein S; Wielopolski P; Moelker A; Springeling T; Bernsen M; Niessen W; Meijering E, 2012, 'Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI', Medical Image Analysis, 16, pp. 301 - 324,
    Journal articles | 2011
    Agarwal S; Van Cappellen WA; Gu茅nol茅 A; Eppink B; Linsen SEV; Meijering E; Houtsmuller A; Kanaar R; Essers J, 2011, 'ATP-dependent and independent functions of Rad54 in genome maintenance', Journal of Cell Biology, 192, pp. 735 - 750,
    Journal articles | 2011
    Buey RM; Mohan R; Leslie K; Walzthoeni T; Missimer JH; Menzel A; Bjeli膰 S; Bargsten K; Grigoriev I; Smal I; Meijering E; Aebersold R; Akhmanova A; Steinmetz MO, 2011, 'Insights into EB1 structure and the role of its c-terminal domain for discriminating microtubule tips from the lattice', Molecular Biology of the Cell, 22, pp. 2912 - 2923,
    Journal articles | 2011
    Grigoriev I; Yu KL; Martinez-Sanchez E; Serra-Marques A; Smal I; Meijering E; Demmers J; Per盲nen J; Pasterkamp RJ; Van Der Sluijs P; Hoogenraad CC; Akhmanova A, 2011, 'Rab6, Rab8, and MICAL3 cooperate in controlling docking and fusion of exocytotic carriers', Current Biology, 21, pp. 967 - 974,
    Journal articles | 2010
    Aguilo MA; Aquino W; Brigham JC; Fatemi M, 2010, 'Correction to 鈥淎n Inverse Problem Approach for Elasticity Imaging through Vibroacoustics鈥 [Apr 10 1012-1021', IEEE Transactions on Medical Imaging, 29, pp. 1331 - 1331,
    Journal articles | 2010
    Dzyubachyk O; Essers J; van Cappellen WA; Baldeyron C; Inagaki A; Niessen WJ; Meijering E, 2010, 'Automated analysis of time-lapse fluorescence microscopy images: From live cell images to intracellular foci', Bioinformatics, 26, pp. 2424 - 2430,
    Journal articles | 2010
    Dzyubachyk O; Van Cappellen WA; Essers J; Niessen WJ; Meijering E, 2010, 'Advanced level-set-based cell tracking in time-lapse fluorescence microscopy', IEEE Transactions on Medical Imaging, 29, pp. 852 - 867,
    Journal articles | 2010
    Dzyubachyk O; Van Cappellen WA; Essers J; Niessen WJ; Meijering E, 2010, 'Erratum: Advanced level-set-based cell tracking in time-lapse fluorescence microscopy (IEEE Transactions on Medical Imaging (2010) 29:3 (852-867))', IEEE Transactions on Medical Imaging, 29, pp. 1331,
    Journal articles | 2010
    Meijering E, 2010, 'Neuron tracing in perspective', Cytometry Part A, 77, pp. 693 - 704,
    Journal articles | 2010
    Montenegro Gouveia S; Leslie K; Kapitein LC; Buey RM; Grigoriev I; Wagenbach M; Smal I; Meijering E; Hoogenraad CC; Wordeman L; Steinmetz MO; Akhmanova A, 2010, 'In vitro reconstitution of the functional interplay between MCAK and EB3 at microtubule plus ends', Current Biology, 20, pp. 1717 - 1722,
    Journal articles | 2010
    Smal I; Grigoriev I; Akhmanova A; Niessen WJ; Meijering E, 2010, 'Microtubule dynamics analysis using kymographs and variable-rate particle filters', IEEE Transactions on Image Processing, 19, pp. 1861 - 1876,
    Journal articles | 2010
    Smal I; Loog M; Niessen W; Meijering E, 2010, 'Quantitative comparison of spot detection methods in fluorescence microscopy', IEEE Transactions on Medical Imaging, 29, pp. 282 - 301,
    Journal articles | 2010
    Stepanova T; Smal I; Van Haren J; Akinci U; Liu Z; Miedema M; Limpens R; Van Ham M; Van Der Reijden M; Poot R; Grosveld F; Mommaas M; Meijering E; Galjart N, 2010, 'History-dependent catastrophes regulate axonal microtubule behavior', Current Biology, 20, pp. 1023 - 1028,
    Journal articles | 2009
    De Weert TT; Cakir H; Rozie S; Cretier S; Meijering E; Dippel DWJ; Van Der Lugt A, 2009, 'Intracranial internal carotid artery calcifications: Association with vascular risk factors and ischemic cerebrovascular disease', American Journal of Neuroradiology, 30, pp. 177 - 184,
    Journal articles | 2009
    Meijering E; Dzyubachyk O; Smal I; van Cappellen WA, 2009, 'Tracking in cell and developmental biology', Seminars in Cell and Developmental Biology, 20, pp. 894 - 902,
    Journal articles | 2008
    Smal I; Draegestein K; Galjart N; Niessen W; Meijering E, 2008, 'Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: Application to microtubule growth analysis', IEEE Transactions on Medical Imaging, 27, pp. 789 - 804,
    Journal articles | 2008
    Smal I; Meijering E; Draegestein K; Galjart N; Grigoriev I; Akhmanova A; van Royen ME; Houtsmuller AB; Niessen W, 2008, 'Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering', Medical Image Analysis, 12, pp. 764 - 777,
    Journal articles | 2008
    Weert TT; Mony茅 C; Meijering E; Booij R; Niessen WJ; Dippel DWJ; Lugt A, 2008, 'Assessment of atherosclerotic carotid plaque volume with multidetector computed tomography angiography', International Journal of Cardiovascular Imaging, 24, pp. 751 - 759,
    Journal articles | 2007
    van Velsen EFS; Niessen WJ; de Weert TT; de Mony茅 C; van der Lugt A; Meijering E; Stokking R, 2007, 'Evaluation of an improved technique for lumen path definition and lumen segmentation of atherosclerotic vessels in CT angiography', European Radiology, 17, pp. 1738 - 1745,
    Journal articles | 2006
    De Weert TT; Ouhlous M; Meijering E; Zondervan PE; Hendriks JM; Van Sambeek MRHM; Dippel DWJ; Van Der Lugt A, 2006, 'In vivo characterization and quantification of atherosclerotic carotid plaque components with multidetector computed tomography and histopathological correlation', Arteriosclerosis, Thrombosis, and Vascular Biology, 26, pp. 2366 - 2372,
    Journal articles | 2006
    Gratama van Andel HAF; Meijering E; van der Lugt A; Vrooman HA; de Mony茅 C; Stokking R, 2006, 'Evaluation of an improved technique for automated center lumen line definition in cardiovascular image data', European Radiology, 16, pp. 391 - 398,
    Journal articles | 2006
    Meijering E; Smal I; Danuser G, 2006, 'Tracking in molecular bioimaging', IEEE Signal Processing Magazine, 23, pp. 46 - 53,
    Journal articles | 2005
    Murphy RF; Meijering E; Danuser G, 2005, 'Guest editorial', IEEE Transactions on Image Processing, 14, pp. 1233 - 1236,
    Journal articles | 2004
    Meijering E; Jacob M; Sarria JCF; Steiner P; Hirling H; Unser M, 2004, 'Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images', Cytometry Part A, 58, pp. 167 - 176,
    Journal articles | 2003
    Meijering E; Unser M, 2003, 'A note on cubic convolution interpolation', IEEE Transactions on Image Processing, 12, pp. 477 - 479,
    Journal articles | 2002
    Meijering E, 2002, 'A chronology of interpolation: From ancient astronomy to modern signal and image processing', Proceedings of the IEEE, 90, pp. 317 - 318,
    Journal articles | 2002
    Meijering E, 2002, 'A chronology of interpolation: From ancient astronomy to modern signal and image processing', Proceedings of the IEEE, 90, pp. 319 - 342,
    Journal articles | 2001
    Meijering EHW; Niessen WJ; Bakker J; Van der Molen AJ; De Kort GAP; Lo RTH; Mali WPTM; Viergever MA, 2001, 'Reduction of patient motion artifacts in digital subtraction angiography: Evaluation of a fast and fully automatic technique', Radiology, 219, pp. 288 - 293,
    Journal articles | 2001
    Meijering EHW; Niessen WJ; Viergever MA, 2001, 'Quantitative evaluation of convolution-based methods for medical image interpolation', Medical Image Analysis, 5, pp. 111 - 126,
    Journal articles | 1999
    Meijering EHW; Niessen WJ; Viergever MA, 1999, 'Retrospective motion correction in digital subtraction angiography: A review', IEEE Transactions on Medical Imaging, 18, pp. 2 - 21,
    Journal articles | 1999
    Meijering EHW; Zuiderveld KJ; Viergever MA, 1999, 'Image reconstruction by convolution with symmetrical piecewise nth-order polynomial kernels', IEEE Transactions on Image Processing, 8, pp. 192 - 201,
    Journal articles | 1999
    Meijering EHW; Zuiderveld KJ; Viergever MA, 1999, 'Image registration for digital subtraction angiography', International Journal of Computer Vision, 31, pp. 227 - 246,
  • Working Papers | 2020
    Rana P; Sowmya A; Meijering E; Song Y, 2020, Estimation of Three-Dimensional Chromatin Morphology for Nuclear Classification and Characterisation,
  • Other | 2024
    Hasan MM; Meijering E; Sowmya A; Kalloniatis M; Phu J, 2024, A basic introduction to artificial intelligence for eye care professionals,
    Other | 2024
    Hasan MM; Phu J; Sowmya A; Meijering E; Kalloniatis M, 2024, CPD: Artificial intelligence 3: AI and diagnosis of glaucoma and neurodegenerative disease,
    Conference Papers | 2024
    Heng Z; Pagnucco M; Meijering E; Song Y, 2024, 'Vascular Topology Rectification Network for Automated Retinal Artery/Vein Segmentation', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2024
    Hu Y; Meijering E; Song Y, 2024, 'Large-Kernel Attention Network with聽Distance Regression and聽Topological Self-correction for聽Airway Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 115 - 126,
    Conference Papers | 2024
    Khan TM; Iqbal S; Naqvi SS; Razzak I; Meijering E, 2024, 'LMBF-Net: A Lightweight Multipath Bidirectional Focal Attention Network For Multifeatures Segmentation', in 2024 IEEE International Conference on Image Processing (ICIP), IEEE, pp. 2807 - 2813, presented at 2024 IEEE International Conference on Image Processing (ICIP), 27 October 2024 - 30 October 2024,
    Preprints | 2024
    Khan TM; Iqbal S; Naqvi SS; Razzak I; Meijering E, 2024, LMBF-Net: A Lightweight Multipath Bidirectional Focal Attention Network for Multifeatures Segmentation,
    Conference Papers | 2024
    Mondol RK; Millar EKA; Sowmya A; Meijering E, 2024, 'MM-Survnet: Deep Learning-Based Survival Risk Stratification in Breast Cancer Through Multimodal Data Fusion', in Proceedings - International Symposium on Biomedical Imaging,
    Preprints | 2024
    Mondol RK; Millar EKA; Sowmya A; Meijering E, 2024, BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion,
    Preprints | 2024
    Mondol RK; Millar EKA; Sowmya A; Meijering E, 2024, MM-SurvNet: Deep Learning-Based Survival Risk Stratification in Breast Cancer Through Multimodal Data Fusion,
    Conference Papers | 2024
    Rahaman MM; Millar EKA; Meijering E, 2024, 'Histopathology Image Classification Using Supervised Contrastive Deep Learning', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2024
    Sandarenu P; Chen J; Slapetova I; Browne L; Graham PH; Swarbrick A; Millar EKA; Song Y; Meijering E, 2024, 'Semi-Supervised Variational Autoencoder for Cell Feature Extraction In Multiplexed Immunofluorescence Images', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2024
    Shanmugalingam K; Sowmya A; Moses D; Meijering E, 2024, 'Prostate Segmentation Using Multiparametric and聽Multiplanar Magnetic Resonance Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 217 - 226,
    Preprints | 2024
    Tchetchenian A; Zekelman L; Chen Y; Rushmore J; Zhang F; Yeterian EH; Makris N; Rathi Y; Meijering E; Song Y; O'Donnell LJ, 2024, Deep multimodal saliency parcellation of cerebellar pathways: linking microstructure and individual function through explainable multitask learning,
    Preprints | 2024
    Yao Y; Smal I; Grigoriev I; Akhmanova A; Meijering E, 2024, Deep Joint Denoising and Detection for Enhanced Intracellular Particle Analysis,
    Conference Papers | 2024
    Zhu Y; Tchetchenian A; Yin X; Liew A; Song Y; Meijering E, 2024, 'AC-UNet: Adaptive Connection UNet for White Matter Tract Segmentation Through Neural Architecture Search', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2023
    Brahmavar SB; Rajesh R; Dash T; Vig L; Verlekar TT; Hasan MM; Khan T; Meijering E; Srinivasan A, 2023, 'IKD+: Reliable Low Complexity Deep Models for Retinopathy Classification', in Proceedings - International Conference on Image Processing, ICIP, pp. 2400 - 2404,
    Preprints | 2023
    Brahmavar SB; Rajesh R; Dash T; Vig L; Verlekar TT; Hasan MM; Khan T; Meijering E; Srinivasan A, 2023, IKD+: Reliable Low Complexity Deep Models For Retinopathy Classification,
    Conference Papers | 2023
    Khan TM; Arsalan M; Iqbal S; Razzak I; Meijering E, 2023, 'Feature Enhancer Segmentation Network (FES-Net)for Vessel Segmentation', in 2023 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2023, pp. 160 - 167,
    Preprints | 2023
    Khan TM; Arsalan M; Iqbal S; Razzak I; Meijering E, 2023, Feature Enhancer Segmentation Network (FES-Net) for Vessel Segmentation,
    Preprints | 2023
    Khan TM; Naqvi SS; Meijering E, 2023, ESDMR-Net: A Lightweight Network With Expand-Squeeze and Dual Multiscale Residual Connections for Medical Image Segmentation,
    Preprints | 2023
    Lekadir K; Feragen A; Fofanah AJ; Frangi AF; Buyx A; Emelie A; Lara A; Porras AR; Chan A-W; Navarro A; Glocker B; Botwe BO; Khanal B; Beger B; Wu CC; Cintas C; Langlotz CP; Rueckert D; Mzurikwao D; Fotiadis DI; Zhussupov D; Ferrante E; Meijering E; Weicken E; Gonz谩lez FA; Asselbergs FW; Prior F; Krestin GP; Collins G; Tegenaw GS; Kaissis G; Misuraca G; Tsakou G; Dwivedi G; Kondylakis H; Jayakody H; Woodruf HC; Mayer HJ; Aerts HJWL; Walsh I; Chouvarda I; Buvat I; Tributsch I; Rekik I; Duncan J; Kalpathy-Cramer J; Zahir J; Park J; Mongan J; Gichoya JW; Schnabel JA; Kushibar K; Riklund K; Mori K; Marias K; Amugongo LM; Fromont LA; Maier-Hein L; Alberich LC; Rittner L; Phiri L; Marrakchi-Kacem L; Donoso-Bach L; Mart铆-Bonmat铆 L; Cardoso MJ; Bobowicz M; Shabani M; Tsiknakis M; Zuluaga MA; Bielikova M; Fritzsche M-C; Camacho M; Linguraru MG; Wenzel M; Bruijne MD; Tolsgaard MG; Ghassemi M; Ashrafuzzaman M; Goisauf M; Yaqub M; Abad铆a MC; Mahmoud MME; Elattar M; Rieke N; Papanikolaou N; Lazrak N; D铆az O; Salvado O; Pujol O; Sall O; Guevara P; Gordebeke P; Lambin P; Brown P; Abolmaesumi P; Dou Q; Lu Q; Osuala R; Nakasi R; Zhou SK; Napel S; Colantonio S; Albarqouni S; Joshi S; Carter S; Klein S; Petersen SE; Auss贸 S; Awate S; Raviv TR; Cook T; Mutsvangwa TEM; Rogers WA; Niessen WJ; Puig-Bosch X; Zeng Y; Mohammed YG; Aquino YSJ; Salahuddin Z; Starmans MPA, 2023, FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare,
    Preprints | 2023
    Mondol RK; Millar EKA; Graham PH; Browne L; Sowmya A; Meijering E, 2023, hist2RNA: An efficient deep learning architecture to predict gene expression from breast cancer histopathology images,
    Preprints | 2023
    Rahaman MM; Millar EKA; Meijering E, 2023, Breast Cancer Histopathology Image based Gene Expression Prediction using Spatial Transcriptomics data and Deep Learning,
    Preprints | 2023
    Rahaman MM; Millar EKA; Meijering E, 2023, Breast cancer histopathology image-based gene expression prediction using spatial transcriptomics data and deep learning,
    Preprints | 2023
    Reinke A; Tizabi MD; Baumgartner M; Eisenmann M; Heckmann-N枚tzel D; Kavur AE; R盲dsch T; Sudre CH; Acion L; Antonelli M; Arbel T; Bakas S; Benis A; Blaschko M; Buettner F; Cardoso MJ; Cheplygina V; Chen J; Christodoulou E; Cimini BA; Collins GS; Farahani K; Ferrer L; Galdran A; Ginneken BV; Glocker B; Godau P; Haase R; Hashimoto DA; Hoffman MM; Huisman M; Isensee F; Jannin P; Kahn CE; Kainmueller D; Kainz B; Karargyris A; Karthikesalingam A; Kenngott H; Kleesiek J; Kofler F; Kooi T; Kopp-Schneider A; Kozubek M; Kreshuk A; Kurc T; Landman BA; Litjens G; Madani A; Maier-Hein K; Martel AL; Mattson P; Meijering E; Menze B; Moons KGM; M眉ller H; Nichyporuk B; Nickel F; Petersen J; Rafelski SM; Rajpoot N; Reyes M; Riegler MA; Rieke N; Saez-Rodriguez J; S谩nchez CI; Shetty S; Smeden MV; Summers RM; Taha AA; Tiulpin A; Tsaftaris SA; Calster BV; Varoquaux G; Wiesenfarth M; Yaniv ZR; J盲ger PF; Maier-Hein L, 2023, Understanding metric-related pitfalls in image analysis validation,
    Conference Papers | 2023
    Shanmugalingam K; Moses D; Sowmya A; Meijering E, 2023, 'Membranous Urethral Reconstruction and Segmentation in Multiplanar T2W MRI Images', in Proceedings - International Symposium on Biomedical Imaging,
    Preprints | 2023
    Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2023, Hybrid Dual Mean-Teacher Network With Double-Uncertainty Guidance for Semi-Supervised Segmentation of MRI Scans,
    Preprints | 2022
    Aviyente S; Frangi A; Meijering E; Mu帽oz-Barrutia A; Liebling M; Ville DVD; Olivo-Marin J-C; Kova膷evi膰 J; Unser M, 2022, From Nano to Macro: Overview of the IEEE Bio Image and Signal Processing Technical Committee,
    Conference Papers | 2022
    Fan L; Sowmya A; Meijering E; Song Y, 2022, 'Fast FF-to-FFPE Whole Slide Image Translation via聽Laplacian Pyramid and聽Contrastive Learning', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 409 - 419,
    Conference Papers | 2022
    Hu Y; Pan Y; Song Y; Meijering E; Cui Z; Zhao Y; Ding Z; Zhu M; Shen D, 2022, 'Parallel Sinogram and Image Framework With Co-Training Strategy for Metal Artifact Reduction in Tooth Ct Images', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2022
    Imani M; Dao TNQ; Meijering E; Duque G, 2022, 'DEVELOPMENT OF NOVEL FULLY AUTOMATIC SEGMENTATION AND QUANTIFICATION TECHNIQUE FOR ASSESSMENT OF MUSCULOSKELETAL ORGANS', in AGING CLINICAL AND EXPERIMENTAL RESEARCH, SPRINGER, pp. S220 - S220,
    Conference Papers | 2022
    Khan TM; Arsalan M; Robles-Kelly A; Meijering E, 2022, 'MKIS-Net: A Light-Weight Multi-Kernel Network for Medical Image Segmentation', in 2022 International Conference on Digital Image Computing: Techniques and Applications (DICTA), IEEE, pp. 1 - 8, presented at 2022 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 30 November 2022 - 02 December 2022,
    Preprints | 2022
    Khan TM; Arsalan M; Robles-Kelly A; Meijering E, 2022, MKIS-Net: A Light-Weight Multi-Kernel Network for Medical Image Segmentation,
    Preprints | 2022
    Khan TM; Naqvi SS; Meijering E, 2022, Leveraging Image Complexity in Macro-Level Neural Network Design for Medical Image Segmentation,
    Preprints | 2022
    Khan TM; Naqvi SS; Robles-Kelly A; Meijering E, 2022, Neural Network Compression by Joint Sparsity Promotion and Redundancy Reduction,
    Preprints | 2022
    Maier-Hein L; Reinke A; Godau P; Tizabi MD; Buettner F; Christodoulou E; Glocker B; Isensee F; Kleesiek J; Kozubek M; Reyes M; Riegler MA; Wiesenfarth M; Kavur AE; Sudre CH; Baumgartner M; Eisenmann M; Heckmann-N枚tzel D; R盲dsch T; Acion L; Antonelli M; Arbel T; Bakas S; Benis A; Blaschko M; Cardoso MJ; Cheplygina V; Cimini BA; Collins GS; Farahani K; Ferrer L; Galdran A; Ginneken BV; Haase R; Hashimoto DA; Hoffman MM; Huisman M; Jannin P; Kahn CE; Kainmueller D; Kainz B; Karargyris A; Karthikesalingam A; Kenngott H; Kofler F; Kopp-Schneider A; Kreshuk A; Kurc T; Landman BA; Litjens G; Madani A; Maier-Hein K; Martel AL; Mattson P; Meijering E; Menze B; Moons KGM; M眉ller H; Nichyporuk B; Nickel F; Petersen J; Rajpoot N; Rieke N; Saez-Rodriguez J; S谩nchez CI; Shetty S; Smeden MV; Summers RM; Taha AA; Tiulpin A; Tsaftaris SA; Calster BV; Varoquaux G; J盲ger PF, 2022, Metrics reloaded: Recommendations for image analysis validation,
    Preprints | 2022
    Manubens-Gil L; Zhou Z; Chen H; Ramanathan A; Liu X; Liu Y; Bria A; Gillette T; Ruan Z; Yang J; Radojevi膰 M; Zhao T; Cheng L; Qu L; Liu S; Bouchard KE; Gu L; Cai W; Ji S; Roysam B; Wang C-W; Yu H; Sironi A; Iascone DM; Zhou J; Bas E; Conde-Sousa E; Aguiar P; Li X; Li Y; Nanda S; Wang Y; Muresan L; Fua P; Ye B; He H-Y; Staiger JF; Peter M; Cox DN; Simonneau M; Oberlaender M; Jefferis G; Ito K; Gonzalez-Bellido P; Kim J; Rubel E; Cline HT; Zeng H; Nern A; Chiang A-S; Yao J; Roskams J; Livesey R; Stevens J; Liu T; Dang C; Guo Y; Zhong N; Tourassi G; Hill S; Hawrylycz M; Koch C; Meijering E; Ascoli GA; Peng H, 2022, BigNeuron: A resource to benchmark and predict best-performing algorithms for automated reconstruction of neuronal morphology,
    Conference Papers | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, 'Imbalanced Cell-Cycle Classification Using Wgan-Div and Mixup', in Proceedings - International Symposium on Biomedical Imaging,
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification,
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification,
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Imbalanced classification for protein subcellular localisation with multilabel oversampling,
    Conference Papers | 2022
    Shanmugalingam K; Sowmya A; Moses D; Meijering E, 2022, 'Attention Guided Deep Supervision Model for Prostate Segmentation in Multisite Heterogeneous MRI Data', in Proceedings of Machine Learning Research, pp. 1085 - 1095
    Conference Papers | 2022
    Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2022, 'Hybrid Attentive Unet for Segmentation of Lower Leg Muscles and Bones From MRI Scans For Musculoskeletal Research', in Proceedings - International Symposium on Biomedical Imaging,
    Conference Papers | 2022
    Snelders M; Koedijk IH; Schirmer J; Mulleners O; van Leeuwen J; de Wagenaar NP; Bartulos O; Voskamp P; Braam S; Guttenberg Z; Danser AHJ; Majoor-Krakauer D; Meijering E; van der Pluijm I; Essers J, 2022, 'Contraction pressure analysis using optical imaging in normal and MYBPC3-mutated hiPSC-derived cardiomyocytes grown on matrices with tunable stiffness', in Biomaterials and Biosystems, LIPPINCOTT WILLIAMS & WILKINS,
    Conference Papers | 2021
    Fan L; Sowmya A; Meijering E; Song Y, 2021, 'Learning Visual Features by Colorization for Slide-Consistent Survival Prediction from Whole Slide Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 592 - 601,
    Conference Papers | 2021
    Rana P; Meijering E; Sowmya A; Song Y, 2021, 'Multi-label classification based on subcellular region-guided feature description for protein localisation', in Proceedings - International Symposium on Biomedical Imaging, pp. 1929 - 1933,
    Preprints | 2021
    Reinke A; Tizabi MD; Sudre CH; Eisenmann M; R盲dsch T; Baumgartner M; Acion L; Antonelli M; Arbel T; Bakas S; Bankhead P; Benis A; Blaschko M; Buettner F; Cardoso MJ; Chen J; Cheplygina V; Christodoulou E; Cimini B; Collins GS; Engelhardt S; Farahani K; Ferrer L; Galdran A; Ginneken BV; Glocker B; Godau P; Haase R; Hamprecht F; Hashimoto DA; Heckmann-N枚tzel D; Hirsch P; Hoffman MM; Huisman M; Isensee F; Jannin P; Kahn CE; Kainmueller D; Kainz B; Karargyris A; Karthikesalingam A; Kavur AE; Kenngott H; Kleesiek J; Kleppe A; Kohler S; Kofler F; Kopp-Schneider A; Kooi T; Kozubek M; Kreshuk A; Kurc T; Landman BA; Litjens G; Madani A; Maier-Hein K; Martel AL; Mattson P; Meijering E; Menze B; Moher D; Moons KGM; M眉ller H; Nichyporuk B; Nickel F; Noyan MA; Petersen J; Polat G; Rafelski SM; Rajpoot N; Reyes M; Rieke N; Riegler M; Rivaz H; Saez-Rodriguez J; S谩nchez CI; Schroeter J; Saha A; Selver MA; Sharan L; Shetty S; Smeden MV; Stieltjes B; Summers RM; Taha AA; Tiulpin A; Tsaftaris SA; Calster BV; Varoquaux G; Wiesenfarth M; Yaniv ZR; J盲ger P; Maier-Hein L, 2021, Common Limitations of Image Processing Metrics: A Picture Story,
    Conference Papers | 2020
    Geurts SN; Oosterhof N; Kuil LE; Van Der Linde HC; Van Ham TJ; Meijering E, 2020, 'Automated Quantitative Analysis of Microglia in Bright-Field Images of Zebrafish', in Proceedings - International Symposium on Biomedical Imaging, pp. 522 - 525,
    Preprints | 2020
    Serra-Marques A; Martin M; Katrukha EA; Grigoriev I; Peeters CAE; Liu Q; Hooikaas PJ; Yao Y; Solianova V; Smal I; Pedersen LB; Meijering E; Kapitein LC; Akhmanova A, 2020, Concerted action of kinesins KIF5B and KIF13B promotes efficient secretory vesicle transport to microtubule plus ends,
    Conference Papers | 2020
    Zhu Y; Meijering E, 2020, 'Neural Architecture Search for Microscopy Cell Segmentation', Lima, Peru, presented at Neural Architecture Search for Microscopy Cell Segmentation, Lima, Peru, 04 October 2020
    Conference Papers | 2019
    Bergwerf H; Bechakra M; Smal I; Jongen JLM; Meijering E, 2019, 'Nerve fiber segmentation in bright-field microscopy images of skin biopsies using deep learning', in Proceedings - International Symposium on Biomedical Imaging, pp. 232 - 235,
    Conference Papers | 2019
    Smal I; Yao Y; Galjart N; Meijering E, 2019, 'Facilitating data association in particle tracking using autoencoding and score matching', in Proceedings - International Symposium on Biomedical Imaging, pp. 1523 - 1526,
    Conference Papers | 2018
    Castilla C; Maska M; Sorokin DV; Meijering E; Ortiz-De-Solorzano C, 2018, 'Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks', in Proceedings - International Symposium on Biomedical Imaging, pp. 413 - 417,
    Preprints | 2018
    Kuil LE; Oosterhof N; Geurts SN; der Linde HCV; Meijering E; van Ham TJ, 2018, Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain,
    Conference Papers | 2018
    Smal I; Galjart N; Meijering E, 2018, 'Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing', in Proceedings - International Symposium on Biomedical Imaging, pp. 973 - 976,
    Conference Papers | 2018
    Yao Y; Smal I; Meijering E, 2018, 'Deep neural networks for data association in particle tracking', in Proceedings - International Symposium on Biomedical Imaging, pp. 458 - 461,
    Conference Papers | 2017
    Radojevic M; Meijering E, 2017, 'Neuron reconstruction from fluorescence microscopy images using sequential Monte Carlo estimation', in Proceedings - International Symposium on Biomedical Imaging, pp. 36 - 39,
    Conference Papers | 2017
    Smal I; Basu S; Sayas L; Galjart N; Meijering E, 2017, 'Gaussian processes for trajectory analysis in microtubule tracking applications', in Proceedings - International Symposium on Biomedical Imaging, pp. 206 - 209,
    Conference Papers | 2016
    Mata G; Radojevic M; Smal I; Morales M; Meijering E; Rubio J, 2016, 'Automatic detection of neurons in high-content microscope images using machine learning approaches', in Proceedings - International Symposium on Biomedical Imaging, pp. 330 - 333,
    Preprints | 2016
    Peng H; Zhou Z; Meijering E; Zhao T; Ascoli GA; Hawrylycz M, 2016, Automatic Tracing of Ultra-Volume of Neuronal Images,
    Conference Papers | 2016
    Smal I; Meijering E, 2016, 'Poisson point processes for solving stochastic inverse problems in fluorescence microscopy', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 326 - 338,
    Conference Papers | 2015
    Radojevie M; Smal I; Meijering E, 2015, 'Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms', in Proceedings - International Symposium on Biomedical Imaging, pp. 885 - 888,
    Conference Papers | 2014
    Demirel O; Smal I; Niessen W; Meijering E; Sbalzarini IF, 2014, 'An adaptive distributed resampling algorithm with non-proportional allocation', in ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, pp. 1635 - 1639,
    Conference Papers | 2014
    Demirel O; Smal I; Niessen WJ; Meijering E; Sbalzarini IF, 2014, 'PPF - A parallel particle filtering library', in IET Conference Publications,
    Conference Papers | 2014
    Demirel O; Smal I; Niessen WJ; Meijering E; Sbalzarini IF, 2014, 'Piecewise constant sequential importance sampling for fast particle filtering', in IET Conference Publications,
    Conference Papers | 2014
    Radojevi膰 M; Smal I; Niessen W; Meijering E, 2014, 'Fuzzy logic based detection of neuron bifurcations in microscopy images', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 1307 - 1310,
    Preprints | 2013
    Demirel 脰; Smal I; Niessen W; Meijering E; Sbalzarini IF, 2013, Adaptive Distributed Resampling Algorithm with Non-Proportional Allocation,
    Preprints | 2013
    Demirel 脰; Smal I; Niessen W; Meijering E; Sbalzarini IF, 2013, PPF - A Parallel Particle Filtering Library,
    Preprints | 2013
    Demirel 脰; Smal I; Niessen WJ; Meijering E; Sbalzarini IF, 2013, Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering,
    Conference Papers | 2013
    Plenge E; Poot DHJ; Niessen WJ; Meijering E, 2013, 'Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 123 - 130,
    Conference Papers | 2012
    Khmelinskii A; Plenge E; Kok P; Dzyubachyk O; Poot DHJ; Suidgeest E; Botha CP; Niessen WJ; Van Der Weerd L; Meijering E; Lelieveldt BPF, 2012, 'Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach', in Proceedings - International Symposium on Biomedical Imaging, pp. 1723 - 1726,
    Conference Papers | 2012
    Meijering E, 2012, 'RECONSTRUCTION AND QUANTIFICATION OF NEURONAL MORPHOLOGY', in 2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI), IEEE, SPAIN, Barcelona, pp. 1787 - 1787, presented at 9th IEEE International Symposium on Biomedical Imaging (ISBI) - From Nano to Macro, SPAIN, Barcelona, 02 May 2012 - 05 May 2012,
    Conference Papers | 2012
    Plenge E; Poot DHJ; Bernsen M; Kotek G; Houston G; Wielopolski P; Van Der Weerd L; Niessen WJ; Meijering E, 2012, 'Super-resolution reconstruction in MRI: Better images faster?', in Progress in Biomedical Optics and Imaging - Proceedings of SPIE,
    Conference Papers | 2011
    Carranza N; Smal I; Dzyubachyk O; Niessen W; Meijering E, 2011, 'Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking', in Proceedings - International Symposium on Biomedical Imaging, pp. 1921 - 1924,
    Conference Papers | 2011
    Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Quantitative comparison of tracking methods for motion analysis in tagged MRI', in Proceedings - International Symposium on Biomedical Imaging, pp. 345 - 348,
    Conference Papers | 2011
    Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Trans-dimensional MCMC methods for fully automatic motion analysis in tagged MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 573 - 580,
    Conference Papers | 2011
    Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Trans-dimensional MCMC methods for fully automatic motion analysis in tagged MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 573 - 580,
    Conference Papers | 2010
    Niessen W; Meijering E, 2010, '2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings: Welcome', in 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings,
    Conference Papers | 2010
    Smal I; Niessen W; Meijering E, 2010, 'Particle filtering methods for motion analysis in tagged MRI', in 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings, pp. 488 - 491,
    Conference Papers | 2009
    Dzyubachyk O; Jelier R; Lehner B; Niessen W; Meijering E, 2009, 'Model-based approach for tracking embryogenesis in Caenorhabditis elegans fluorescence microscopy data', in Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, pp. 5356 - 5359,
    Conference Papers | 2009
    Dzyubachyk O; Van Cappellen WA; Essers J; Niessen W; Meijering E, 2009, 'Energy minimization methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy', in Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009, pp. 1127 - 1130,
    Conference Papers | 2009
    Smal I; Grigoriev I; Akhmanova A; Niessen WJ; Meijering E, 2009, 'Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters', in Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, pp. 1012 - 1015,
    Conference Papers | 2009
    Smal I; Loog M; Niessen W; Meijering E, 2009, 'Quantitative comparison of spot detection methods in live-cell fluorescence microscopy imaging', in Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009, pp. 1178 - 1181,
    Conference Papers | 2008
    Dzyubachyk O; Niessen W; Meijering E, 2008, 'Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images', in 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI, pp. 185 - 188,
    Conference Papers | 2008
    Smal I; Niessen W; Meijering E, 2008, 'A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering', in 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI, pp. 264 - 267,
    Conference Papers | 2007
    Dzyubachyk O; Niessen W; Meijering E, 2007, 'A variational model for level-set based cell tracking in time-lapse fluorescence microscopy images', in 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 97 - 100,
    Conference Papers | 2007
    Smal I; Draegestein K; Galjart N; Niessen W; Meijering E, 2007, 'Rao-blackwellized marginal particle filtering for multiple object tracking in molecular bioimaging', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 110 - 121,
    Conference Papers | 2007
    Smal I; Niessen W; Meijering E, 2007, 'Advanced particle filtering for multiple object tracking in dynamic fluorescence microscopy images', in 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 1048 - 1051,
    Conference Papers | 2006
    Kova膷evi膰 J; Meijering E, 2006, '2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings: Welcome', in 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings
    Conference Papers | 2006
    Smal I; Niessen W; Meijering E, 2006, 'Bayesian tracking for fluorescence microscopic imaging', in 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 550 - 553
    Conference Papers | 2006
    Smal I; Niessen W; Meijering E, 2006, 'Particle filtering for multiple object tracking in molecular cell biology', in NSSPW - Nonlinear Statistical Signal Processing Workshop 2006,
    Conference Papers | 2004
    Gratama Van Andel HAF; Meijering E; Van Der Lugt A; Vrooman HA; Stokking R, 2004, 'VAMPIRE: Improved method for automated center lumen line definition in atherosclerotic carotid arteries in CTA data', in Lecture Notes in Computer Science, pp. 525 - 532
    Conference Papers | 2004
    Meijering E; Jacob M; Sarria JCF; Steiner P; Hirling H; Unser M, 2004, 'Neurite tracing in fluorescence microscopy images using ridge filtering and graph searching: Principles and validation', in 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 1219 - 1222
    Conference Papers | 2003
    Meijering E; Jacob M; Sarria JCF; Unser M, 2003, 'A novel approach to neurite tracing in fluorescence microscopy images', in Proceedings of the IASTED International Conference on Signal and Image Processing, pp. 491 - 495
    Conference Papers | 2002
    Meijering E; Niessen W; Weickert J; Viergever M, 2002, 'Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation', in Medical Image Analysis, pp. 215 - 233,
    Conference Papers | 2001
    Meijering E; Niessen W; Weickert J; Viergever M, 2001, 'Evaluation of diffusion techniques for improved vessel visualization and quantification in three-dimensional rotational angiography', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 177 - 185,
    Conference Papers | 2000
    Baert SAM; Niessen WJ; Meijering EHW; Frangi AF; Viergever MA, 2000, 'Guide wire tracking during endovascular interventions', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 727 - 734,
    Conference Papers | 2000
    Baert SAM; Niessen WJ; Meijering EHW; Frangi AF; Viergever MA, 2000, 'Guide wire tracking in interventional radiology', in Lemke HU; Vannier MW; Inamura K; Farman AG; Doi K (eds.), CARS 2000: COMPUTER ASSISTED RADIOLOGY AND SURGERY, ELSEVIER SCIENCE BV, CA, SAN FRANCISCO, pp. 537 - 542, presented at 14th International Congress and Exhibition on Computer Assisted Radiology and Surgery (CARS 2000), CA, SAN FRANCISCO, 28 June 2000 - 01 July 2000,
    Conference Papers | 2000
    Meijering EHW, 2000, 'Spline interpolation in medical imaging: Comparison with other convolution-based approaches', in European Signal Processing Conference
    Conference Papers | 1999
    Meijering EHW; Niessen WJ; Pluim JPW; Viergever MA, 1999, 'Quantitative comparison of sinc-approximating kernels for medical image interpolation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 210 - 218,
    Conference Papers | 1999
    Meijering EHW; Niessen WJ; Viergever MA, 1999, 'Piecewise polynomial kernels for image interpolation: A generalization of cubic convolution', in IEEE International Conference on Image Processing, pp. 647 - 651
    Conference Papers | 1999
    Meijering EHW; Niessen WJ; Viergever MA, 1999, 'Sinc-approximating kernels of classical polynomial interpolation', in IEEE International Conference on Image Processing, pp. 652 - 656
    Conference Papers | 1999
    Meijering EHW; Zuiderveld KJ; Niessen WJ; Viergever MA, 1999, 'Fast image registration technique for motion artifact reduction in DSA', in IEEE International Conference on Image Processing, pp. 435 - 439
    Conference Papers | 1998
    Maintz JBA; Meijering EH; Viergever MA, 1998, 'General multimodal elastic registration based on mutual information', in Proceedings of SPIE - The International Society for Optical Engineering, pp. 144 - 154,
    Conference Papers | 1998
    Meijering EHW; Zuiderveld KJ; Viergever MA, 1998, 'A fast technique for motion correction in DAS using a feature-based, irregular grid', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 590 - 597,
    Conference Papers |
    Kovacevic J; Meijering E, 'Welcome', in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006., IEEE, pp. iii - iii, presented at 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006.,